Moran process

A Moran process or Moran model is a simple used in biology to describe populations. The process is named after Patrick Moran, who first proposed the model in 1958. It can be used to model variety-increasing processes such as mutation as well as variety-reducing effects such as genetic drift and natural selection. The process can describe the probabilistic dynamics in a finite population of constant size N in which two alleles A and B are competing for dominance. The two alleles are considered to be true replicators (i.e. entities that make copies of themselves).

In each time step a random individual (which is of either type A or B) is chosen for reproduction and a random individual is chosen for death; thus ensuring that the population size remains constant. To model selection, one type has to have a higher fitness and is thus more likely to be chosen for reproduction. The same individual can be chosen for death and for reproduction in the same step.

Neutral drift is the idea that a neutral mutation can spread throughout a population, so that eventually the original allele is lost. A neutral mutation does not bring any fitness advantage or disadvantage to its bearer. The simple case of the Moran process can describe this phenomenon.

If the number of A individuals is given by i then the Moran process is defined on the state space i = 0, ..., N. Since the number of A individuals can change at most by one at each time step, a transition exists only between state i and state i − 1, i and i + 1. Thus the transition matrix of the stochastic process is tri-diagonal in shape and the transition probabilities are

The entry ${\displaystyle P_{i,j}}$ denotes the probability to go from state i to state j. To understand the formulas for the transition probabilities one has to look at the definition of the process which states that always one individual will be chosen for reproduction and one is chosen for death. Once the A individuals have died out, they will never be reintroduced into the population since the process does not model mutations (A cannot be reintroduced into the population once it has died out and vice versa) and thus ${\displaystyle P_{0,0}=1}$. For the same reason the population of A individuals will always stay N once they have reached that number and taken over the population and thus ${\displaystyle P_{N,N}=1}$. The states 0 and N are called absorbing while the states 1, ..., N − 1 are called transient. The intermediate transition probabilities can be explained by considering the first term to be the probability to choose the individual whose abundance will increase by one and the second term the probability to choose the other type for death. Obviously, if the same type is chosen for reproduction and for death, then the abundance of one type does not change.

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