The suburb is named after John Flynn, who was a Presbyterian Minister and Missionary who was mainly responsible for the formation of the Australian Inland Mission Aerial Medical service in 1928. Flynn was the forerunner of the Flying Doctor Service in Australia. Streets in Flynn are named after workers in the flying doctor service and the suburb name 'Flynn' was gazetted on 9 September 1971. Flynn is located between Tillyard Drive, Kingsford Smith Drive and Ginninderra Drive and is next to the suburbs of Charnwood, Fraser, Melba, Latham and Spence.

In 2011, the median house price for the suburb of Flynn was A$475,000.

Flynn Primary School and Preschool are located in the centre of the suburb. Flynn Primary School and Preschool were opened in February 1974, and the primary school was closed in 2006 under the ACT Government's controversial mass school closures program. The preschool is still open. The school's community appealed the closure in the ACT Supreme Court, raising A$50,000 demanded by the ACT Government as security of costs to proceed. Despite running for two years, the appeal was never heard in court. In March 2009, the appeal was dismissed by consent when the ACT Government threatened to apply for further costs.

Flynn Primary School and Preschool were one of only four school complexes designed by award-winning architect Enrico Taglietti, and is considered to be a good example of his dramatic application of twentieth century organic architecture. The Primary School was the first fully open-plan school in the ACT. The grounds also contain a National Memorial to the Royal Flying Doctors' Reverend John Flynn and a separate memorial to George Simpson. Taglietti called the school one of his most important works.

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