In geology, petrifaction or petrification is the process by which organic material becomes a fossil through the replacement of the original material and the filling of the original pore spaces with minerals. Petrified wood typifies this process, but all organisms, from bacteria to vertebrates, can become petrified (although harder, more durable matter such as bone, beaks, and shells survive the process better than softer remains such as muscle tissue, feathers, or skin). Petrification takes place through a combination of two similar processes: permineralization and replacement. These processes create replicas of the original specimen that are similar down to the microscopic level.
One of the processes involved in petrification is permineralization. The fossils created through this process tend to contain a large amount of the original material of the specimen. This process occurs when groundwater containing dissolved minerals (most commonly quartz, calcite, pyrite, siderite (iron carbonate), and apatite (calcium phosphate) ), fills pore spaces and cavities of specimens, particularly bone, shell or wood. The pores of the organisms' tissues are filled when these minerals precipitate out of the water. Two common types of permineralization are silicification and pyritization.
Silicification is the process in which organic matter becomes saturated with silica. A common source of silica is volcanic material. Studies have shown that in this process, most of the original organic matter is destroyed. Silicification most often occurs in two environments-either the specimen is buried in sediments of deltas and floodplains or organisms are buried in volcanic ash. Water must be present for silicification to occur because it reduces the amount of oxygen present and therefore reduces the deterioration of the organism by fungi, maintains organism shape, and allows for the transportation and deposition of silica. The process begins when a specimen is permeated with an aqueous silica solution. The cell walls of the specimen are progressively dissolved and silica is deposited into the empty spaces. In wood samples, as the process proceeds, cellulose and lignin, two components of wood, are degraded and replaced with silica. The specimen is transformed to stone (a process called lithification) as water is lost. For silicification to occur, the geothermic conditions must include a neutral to slightly acidic pH and a temperature and pressure similar to shallow-depth sedimentary environments; under these conditions, silicification can occur in 50,000 years or less.