List of sequence alignment software

This list of sequence alignment software is a compilation of software tools and web portals used in pairwise sequence alignment and multiple sequence alignment. See structural alignment software for structural alignment of proteins.

*Sequence type: protein or nucleotide

*Sequence type: protein or nucleotide **Alignment type: local or global

*Sequence type: protein or nucleotide. **Alignment type: local or global

*Sequence type: protein or nucleotide