Booty went to Evangel Christian Academy in Shreveport, Louisiana. Josh's father Johnny was an all-American highschool football player as well at Shreveport's Woodlawn High School (which produced NFL quarterbacks Terry Bradshaw and Joe Ferguson in the 1960s), and was the athletic director at Evangel Christian. He was also one of the founders of the Evangel school that turned into a football factory. Booty was named to the All-Time National High School All-American team by Dick Butkus. Joe Namath, and John Elway were the other two QB's mentioned on the All-Time team.

As quarterback for the football team, he threw for 11,700 yards and 126 touchdowns, becoming the first high school player in history to throw for more than 10,000 yards (despite missing the last four games of his senior year because of a broken hand). Booty was named the USA Today Offensive Player of the Year and was named the National High School Player of the Year by at least six associations, including Parade and the Football News.

Evangel won the Louisiana High School Athletic Association Class 1A state championship in 1993, the first of 11 the Eagles would win between 1993 and 2006.

Booty's main competition for the 1993 awards was Peyton Manning, who was then a senior at Isidore Newman School in New Orleans.

As a shortstop for the baseball team, he was a four-time All-State choice at shortstop. As a senior, he batted .429 with 20 intentional walks, 25 stolen bases, and 12 home runs in 70 at bats. He was the starting shortstop for the U.S. Junior Olympic National Team that won the silver medal. He was a USA Today All-American shortstop. Booty won a silver medal in the 1993 U.S. Olympic Festival. He was the 5th pick overall in the 1994 Major League Baseball Draft by the Florida Marlins.

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