In evolutionary developmental biology, homeotic genes are genes which regulate the development of anatomical structures in various organisms such as insects, mammals, and plants. This regulation is done via the programming of various transcription factors by the homeotic genes, and these factors affect genes through regulatory genetic pathways.
Mutations in homeotic genes cause displaced body parts, such as antennae growing at the posterior of the fly instead of at the head. Mutations that lead to such ectopic placements are usually lethal.
There are several subsets of homeotic genes. They include many of the Hox and ParaHox genes that are important for segmentation. Hox genes are found in bilaterian animals, including Drosophila (in which they were first discovered), starfish, and humans. Hox genes are a subset of the homeobox genes. The Hox genes are often preserved across species, so some of the Hox genes of Drosophila are homologous to those in humans. In general, Hox genes play a role of regulating expression of genes as well as aiding in development and assignment of specific structures during embryonic growth. This can range from segmentation in Drosophila to central nervous system (CNS) development in vertebrates.
They also include the MADS-box-containing genes involved in the ABC model of flower development. Besides flower-producing plants, the MADS-box motif is also present in other organisms such as insects, yeasts, and mammals. They have various functions depending on the organism including flower development, proto-oncogene transcription, and gene regulation in specific cells (such as muscle cells).
Despite the terms being commonly interchanged, not all homeotic genes are Hox genes; the MADS-box genes are homeotic but not Hox genes. Thus, the Hox genes are a subset of homeotic genes.
One of the most commonly studied model organisms in regards to homeotic genes is Drosophila, specifically Drosophila melanogaster. The homeotic genes of this organism occur in either the Antennapedia complex (ANT-C) or the Bithorax complex (BX-C). Each of the complexes focuses on a different area of development. The antennapedia complex is composed of five genes, including proboscipedia, and is involved in the development of the upper area of the fly such as the head and the thorax segments. The bithorax complex is composed of three main genes and is involved in the development of the lower area of the fly such as the abdominal area as well as the posterior segments and thorax.