Hertha BSC's 2006–07 season began on 16 July, with their UEFA Intertoto Cup match against FC Moscow, and ended on 19 May, with their Bundesliga match against Eintracht Frankfurt. They were one of 11 winners of the UEFA Intertoto Cup. In the UEFA Cup, and in the DFB-Ligapokal they were eliminated in the first round. They made it as far as the quarter-finals of the DFB-Pokal, and finished tenth in the Bundesliga.

Note: Flags indicate national team as defined under FIFA eligibility rules. Players may hold more than one non-FIFA nationality.

In: Note: Flags indicate national team as defined under FIFA eligibility rules. Players may hold more than one non-FIFA nationality.

Out: Note: Flags indicate national team as defined under FIFA eligibility rules. Players may hold more than one non-FIFA nationality.

In: Note: Flags indicate national team as defined under FIFA eligibility rules. Players may hold more than one non-FIFA nationality.

Out: Note: Flags indicate national team as defined under FIFA eligibility rules. Players may hold more than one non-FIFA nationality.