Enigmatic taxon

Incertae sedis (Latin for "of uncertain placement") is a term used for a taxonomic group where its broader relationships are unknown or undefined. Alternatively, such groups are frequently referred to as "enigmatic taxa". In the system of open nomenclature, uncertainty at specific taxonomic levels is indicated by incertae familiae (of uncertain family), incerti subordinis (of uncertain suborder), incerti ordinis (of uncertain order) and similar terms.

When formally naming a taxon, uncertainty about its taxonomic classification can be problematic. The International Code of Nomenclature for algae, fungi, and plants, stipulates that "species and subdivisions of genera must be assigned to genera, and infraspecific taxa must be assigned to species, because their names are combinations", but ranks higher than the genus may be assigned incertae sedis.

This excerpt from a 2007 scientific paper about crustaceans of the Kuril-Kamchatka Trench and the Japan Trench describes typical circumstances through which this category is applied in discussing:

...the removal of many genera from new and existing families into a state of incertae sedis. Their reduced status was attributed largely to poor or inadequate descriptions but it was accepted that some of the vagueness in the analysis was due to insufficient character states. It is also evident that a proportion of the characters used in the analysis, or their given states for particular taxa, were inappropriate or invalid. Additional complexity, and factors that have misled earlier authorities, are intrusion by extensive homoplasies, apparent character state reversals and convergent evolution.

If a formal phylogenetic analysis is conducted that does not include a certain taxon, the authors might choose to label the taxon incertae sedis instead of guessing its placement. This is particularly common when molecular phylogenies are generated, since tissue for many rare organisms is hard to obtain. It is also a common scenario when fossil taxa are included, since many fossils are defined based on partial information. For example, if the phylogeny was constructed using soft tissue and vertebrae as principal characters and the taxon in question is only known from a single tooth, it would be necessary to label it incertae sedis.

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