Christopher Fowler (1610–1678) was an English ejected minister.
He was the son of John Fowler, and was born at Marlborough, Wiltshire, about 1610. He entered Magdalen College, Oxford, as a servitor in 1627, and graduated B.A. on 9 February 1632. Moving to St. Edmund Hall, he graduated M.A. on 29 October 1634. To John Prideaux he owed a strong attachment to Reformed theology. He took holy orders, and was a Puritan preacher in and about Oxford, until he obtained a living at West Woodhay, Berkshire, before 1641.
On the surrender of Reading (26 April 1643), Thomas Bunbury, vicar of St. Mary's, joined King Charles in Oxford; his living was sequestered and given to Fowler. He took the covenant (1643), and was a strong presbyterian cause. Thinking himself unsafe in the neighbourhood of the royalist troops at the manor-house of Donnington, Berkshire, garrisoned for the king at the time of the second battle of Newbury (27 October 1644), Fowler went to London. Here his preaching attracted a crowd of hearers, and Anthony Wood suggested that he was at this time preacher at St Margaret's, Lothbury; it seems, however, from other sources that he first obtained an appointment at Albourn, Sussex, and was at St Margaret's from about 1652. In 1649 Fowler refused to take the engagement; but he was later made a fellow of Eton College.