Bioconductor
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| Stable release |
3.4 / 18 October 2016
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|---|---|
| Operating system | Linux, macOS, Windows |
| Platform | R programming language |
| Type | Bioinformatics |
| License | Artistic License 2.0 |
| Website | www |
Bioconductor is a free, open source and open development software project for the analysis and comprehension of genomic data generated by wet lab experiments in molecular biology.
Bioconductor is based primarily on the statistical R programming language, but does contain contributions in other programming languages. It has two releases each year that follow the semiannual releases of R. At any one time there is a release version, which corresponds to the released version of R, and a development version, which corresponds to the development version of R. Most users will find the release version appropriate for their needs. In addition there are a large number of genome annotation packages available that are mainly, but not solely, oriented towards different types of microarrays.
The project was started in the Fall of 2001 and is overseen by the Bioconductor core team, based primarily at the Fred Hutchinson Cancer Research Center, with other members coming from international institutions.
Most Bioconductor components are distributed as R packages, which are add-on modules for R. Initially most of the Bioconductor software packages focused on the analysis of single channel Affymetrix and two or more channel cDNA/Oligo microarrays. As the project has matured, the functional scope of the software packages broadened to include the analysis of all types of genomic data, such as SAGE, sequence, or SNP data.
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