The 2016 Indy Eleven season was the club's third season of existence. The club continued to play in North American Soccer League, the second tier of the American soccer pyramid.

Note: Flags indicate national team as defined under FIFA eligibility rules. Players may hold more than one non-FIFA nationality.

Note: Flags indicate national team as has been defined under FIFA eligibility rules. Players may hold more than one non-FIFA nationality.

In: Note: Flags indicate national team as defined under FIFA eligibility rules. Players may hold more than one non-FIFA nationality.

Out: Note: Flags indicate national team as defined under FIFA eligibility rules. Players may hold more than one non-FIFA nationality.

In: Note: Flags indicate national team as defined under FIFA eligibility rules. Players may hold more than one non-FIFA nationality.

Out: Note: Flags indicate national team as defined under FIFA eligibility rules. Players may hold more than one non-FIFA nationality.

Note: 9 vs. 9 scrimmage

Last updated: 11 June 2016.
Source: Match reports

Last updated: 11 June 2016.
Source: Match reports
Ground: A = Away; H = Home. Result: D = Draw; L = Loss; W = Win; P = Postponed.

Last updated: 3 November 2016.
Source: Match reports

Last updated: 3 November 2016.
Source: Match reports
Ground: A = Away; H = Home. Result: D = Draw; L = Loss; W = Win; P = Postponed.