The 2016 FC Kairat season is the 6th successive season that the club playing in the Kazakhstan Premier League, the highest tier of association football in Kazakhstan, since their promotion back to the top flight in 2009. As reigning Kazakhstan Cup champions, Kairat will participate in the Kazakhstan Super Cup and the Europa League.

Aleksandr Borodyuk replaced Vladimír Weiss as the clubs manager at the start of the season, but resigned as manager on 5 April following a poor start to the season. On 7 April, Kakhaber Tskhadadze was announced as the clubs new manager.

Note: Flags indicate national team as defined under FIFA eligibility rules. Players may hold more than one non-FIFA nationality.

In: Note: Flags indicate national team as defined under FIFA eligibility rules. Players may hold more than one non-FIFA nationality.

Out: Note: Flags indicate national team as defined under FIFA eligibility rules. Players may hold more than one non-FIFA nationality.

Trialists: Note: Flags indicate national team as defined under FIFA eligibility rules. Players may hold more than one non-FIFA nationality.

In: Note: Flags indicate national team as defined under FIFA eligibility rules. Players may hold more than one non-FIFA nationality.

Out: Note: Flags indicate national team as defined under FIFA eligibility rules. Players may hold more than one non-FIFA nationality.

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