The 2016–17 season is Sheffield Wednesday's fifth consecutive season in the Championship. Along with competing in the Championship, the club will also participate in the FA Cup and League Cup.

The season covers the period from 1 July 2016 to 30 June 2017.

Sheffield Wednesday started the 2016-17 season with a 1–0 win at home against Aston Villa, thanks to a late Fernando Forestieri goal. The Owls' run in the League Cup did not last long as they lost 2–1 at Cambridge United after extra time, with Lucas João scoring for Sheffield Wednesday. In the next four league games The Owls managed just two points, with a 0–0 draw away to Norwich followed by a 3–1 away loss at Burton Albion, a 2–0 home loss to Leeds United and a 1–1 draw away to Brentford.

The Owls got off to a winning start in September with a 2–1 win over Wigan Athletic at Hillsborough. Steven Fletcher equalised for Sheffield Wednesday, scoring his first competitive goal for the club, whilst Fernando Forestieri scored the winning goal. Another home win followed with a 3–2 win over Bristol City thanks to Kieran Lee's 96th minute winning goal. The Owls' only loss in September came against Birmingham City losing 2–1 at St Andrews. This was followed by two successive victories, 2–1 at home against Nottingham Forest and 1–0 away against Blackburn Rovers.

The Owls lost their first game of October, a 2–1 loss at home against Brighton and Hove Albion. After the international break, Sheffield Wednesday got their first win of the month against Huddersfield Town thanks to Fernando Forestieri's 68th-minute penalty which was the only goal of the game. In the next game, a mid-week fixture, The Owls left the Cardiff City Stadium with a point after a 1–1 draw, with Daniel Pudil scoring the equalising goal. A few days later, Gary Hooper's 40th-minute goal was enough for Sheffield Wednesday to get all three points in their home game against Queens Park Rangers.

With only three games in November, The Owls managed four points out of a possible nine. Despite managing to equalise after just four minutes of going 1–0 down against Ipswich Town at home, Sheffield Wednesday eventually lost 2–1. The Owls drew 1–1 away against Fulham in their next game, despite leading for most of the game thanks to a goal from Fernando Forestieri after just 10 minutes. In their final game of November, Sheffield Wednesday beat Wolves 2–0 at Hillsborough, with Fernando Forestieri scoring a penalty and Kieran Lee scoring The Owls' second goal.

In a game which saw three players dismissed (Forestieri for The Owls and Beckford and Doyle for Preston North End), Sheffield Wednesday managed to take all three points with a 2–1 victory, with Fernando Forestieri and Steven Fletcher on the score sheet, the latter scoring from a penalty kick after on-loan winger Will Buckley was fouled in the penalty area by opposition goalkeeper Chris Maxwell. After a 2–1 away to Reading, Sheffield Wednesday won all of their next three games, with a 2–0 home win against local rivals Barnsley, a 1–0 home win against local rivals Rotherham United and a 1–0 away win against league table leaders Newcastle United, with team captain Glenn Loovens scoring the winning goal, his first for the club. In The Owls' final game of 2016, Adam Reach scored a late equaliser against Preston North End, his first goal for the club.

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