2006–07 Macedonian Football Cup
| Country |
 Macedonia
|
||
|---|---|---|---|
| Teams | 32 | ||
| Defending champions | Makedonija GP | ||
| Champions | Vardar (5th title) | ||
| Runners-up | Pobeda | ||
| Matches played | 44 | ||
| Goals scored | 142 (3.23 per match) | ||
|
|||
The 2006–07 Macedonian Football Cup was the 15th season of Macedonia's football knockout competition. FK Makedonija Gjorče Petrov were the defending champions, having won their first title. The 2006–07 champions were FK Vardar who won their fifth title.
Matches were played on 30 July 2006.
*Interrupted at 0–2. Match awarded to Shkëndija 79.
The draw was held on 18 August 2006 in Skopje. The first legs were played on 20 September and second were played on 18 October 2006.
The draw was held on 20 October 2006 in Skopje. The first legs were played on 1 November and second were played on 29 November 2006.
The draw was held on 5 December 2006 in Skopje. The first legs were played on 11 April and the second on 2 May 2007.
Pobeda won 3–1 on aggregate.
Vardar won 3–2 on aggregate.
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