2003–04 Macedonian Football Cup
| Country |
 Macedonia
|
||
|---|---|---|---|
| Teams | 32 | ||
| Champions | Sloga Jugomagnat (3rd title) | ||
| Runners-up | Napredok | ||
| Matches played | 45 | ||
| Goals scored | 160 (3.56 per match) | ||
|
|||
The 2003–04 Macedonian Football Cup was the 12th season of Macedonia's football knockout competition. FK Cementarnica 55 were the defending champions, having won their first title. The 2003–04 champions were FK Sloga Jugomagnat who won their third title after appearing in their eighth Final in nine seasons.
Matches were played on 3 August 2003.
The first legs were played on 1 October and second were played on 22 October 2003.
The first legs were played on 26 November and second were played on 3 December 2003.
The first legs were played on 10 March and the second on 15 April 2004.
2–2 on aggregate. Napredok won on away goals rule.
2–2 on aggregate. Sloga Jugomagnat won on away goals rule.
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