1999–2000 Slovak Cup
| Country |
 Slovakia
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|---|---|---|---|
| Teams | 42 | ||
| Champions | Inter Bratislava | ||
| Runners-up | 1. FC Košice | ||
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The 1999–2000 Slovak Cup was the 31st season of Slovakia's annual knock-out cup competition and the seventh since the independence of Slovakia. It began on 25 July 1999 with Preliminary round and ended on 8 May 2000 with the Final. The winners of the competition earned a place in the first round of the UEFA Cup. Slovan Bratislava were the defending champions.
First leg: July 25, 1999
Second leg: August 4, 1999
First leg: July 25, 1999
Second leg: August 4, 1999
September 21, 1999
September 21, 1999
First leg: April 4, 2000
Second leg: April 18, 2000
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