1998–99 Macedonian Football Cup
| Country |
 Macedonia
|
||
|---|---|---|---|
| Defending champions | Vardar | ||
| Champions | Vardar (4th title) | ||
| Runners-up | Sloga Jugomagnat | ||
|
|||
The 1998–99 Macedonian Football Cup was the 7th season of Macedonia's football knockout competition. FK Vardar defended their title, having won their fourth title.
The first legs were played on 10 March and second were played on 17 March 1999.
The first legs were played on 7 April and the second were played on 21 April 1999.
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