The 1998–99 FAW Premier Cup was the second season of the tournament since its founding in 1997.
Inter CableTel v Cwmbrân Town
Newtown v Wrexham
Cardiff City v Swansea City
Barry Town v Merthyr Tydfil
Barry Town v Inter CableTel
Wrexham v Cardiff City
Inter CableTel v Barry Town
Cardiff City v Wrexham
Wrexham v Barry Town
