The 1987–88 FC Bayern Munich season was the 88th season in the club's history and 23rd season since promotion from Regionalliga Süd in 1965. Bayern Munich finished as runner-up in the Bundesliga to SV Werder Bremen. The club reached the quarterfinals of both the DFB-Pokal and the European Cup. The inaugural DFB-Supercup was won by Bayern Munich over Hamburger SV. This season was the first season under manager Jupp Heynckes, who replaced Udo Lattek.

Source:
Ground: A = Away; H = Home. Result: D = Draw; L = Loss; W = Win; P = Postponed.

Source:
Rules for classification: 1) points; 2) goal difference; 3) number of goals scored
(C) = Champion; (R) = Relegated; (P) = Promoted; (E) = Eliminated; (O) = Play-off winner; (A) = Advances to a further round.
Only applicable when the season is not finished:
(Q) = Qualified to the phase of tournament indicated; (TQ) = Qualified to tournament, but not yet to the particular phase indicated; (RQ) = Qualified to the relegation tournament indicated; (DQ) = Disqualified from tournament.

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