The 1893–94 season was the ninth since the foundation of St. Mary's F.C. based in Southampton in southern England. For the third consecutive year, the club were eliminated in the second qualifying round of the FA Cup; they were also defeated in the final of the Hampshire Senior Cup.

Having embraced professionalism in the previous season, the club recruited two players from The Football League in the summer of 1893:Jack Angus from Ardwick and Harry Offer, who had previously been with Royal Arsenal.The season started well, with four consecutive victories in friendly matches, including a 9–2 victory over Christchurch (in which Angus scored four) on 22 September and a 7–0 victory over the Royal Engineers two weeks later.

In the FA Cup an easy victory over Uxbridge was followed by defeat at Reading. Two days after the cup defeat, St. Mary's entertained Bolton Wanderers with the Football League side demonstrating their superiority with an emphatic 5–0 victory. This was the only defeat before Christmas.

In the New Year, a series of injuries, including to full-back Ginger Price and captain George Carter, led to a fall off in form. In the Hampshire Senior Cup, the holders Freemantle were defeated at the second attempt in the semi-final (in which Angus was sent off) leading to the final, where St. Mary's lost to a team from the Royal Engineers. In the final, Price's replacement, Rowthorn, suffered serious internal injuries, thus ending his football career. Shortly afterwards, St. Mary's recruited a replacement full-back, when they signed Lachie Thomson from Stoke. Thomson was the first of several players to be recruited from Stoke; he would be joined by six of his former Stoke colleagues by October 1895.

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